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Archived Comments for: GenomeGraphs: integrated genomic data visualization with R

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  1. Correction to code for example II

    Neil Saunders, CSIRO

    26 March 2010

    There is a small error in the code sample for example II. Line 5:
    probeId = as.character(unrPositions[,1), nProbes = unrNProbes,

    should read:
    probeId = as.character(unrPositions[,1]), nProbes = unrNProbes,

    Competing interests

    None declared

  2. Typographical error in code for Figure 2

    Neil Saunders, CSIRO

    5 July 2010

    The code for Figure 2 contains a typo (missing right square bracket). It should read:

    exon = makeExonArray(intensity = unrData, probeStart = unrPositions[,3], probeEnd = unrPositions[,4],
    probeId = as.character(unrPositions[,1]), nProbes = unrNProbes,
    dp = DisplayPars(color = col, mapColor = 'dodgerblue2'), displayProbesets = FALSE)


    Has BMC considered formatting code on web pages? Even a simple fixed-width font would make it easier to read and copy/paste.

    Competing interests

    None declared

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