This is a nice comparative analysis of pathway databases. I would just point out that WikiPathways does in fact have an API. This can be used to extract pathway information in a much more efficient manner than presented in this article.
Details can be found here: http://wikipathways.org/index.php/Help:WikiPathways_Webservice
And an open access article describing the web service can be found here: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0006447
WikiPathways API
10 November 2010
This is a nice comparative analysis of pathway databases. I would just point out that WikiPathways does in fact have an API. This can be used to extract pathway information in a much more efficient manner than presented in this article.
Details can be found here:
http://wikipathways.org/index.php/Help:WikiPathways_Webservice
And an open access article describing the web service can be found here:
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0006447
Competing interests
I am a developer for WikiPathways.