Volume 11 Supplement 1

Selected articles from the Eighth Asia-Pacific Bioinformatics Conference (APBC 2010)

Research

Edited by Laxmi Parida and Gene Myers

The Eighth Asia Pacific Bioinformatics Conference (APBC 2010). Go to conference site.

Bangalore, India

18-21 January 2010

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  1. Research

    MTar: a computational microRNA target prediction architecture for human transcriptome

    MicroRNAs (miRNAs) play an essential task in gene regulatory networks by inhibiting the expression of target mRNAs. As their mRNA targets are genes involved in important cell functions, there is a growing inte...

    Vinod Chandra, Reshmi Girijadevi, Achuthsankar S Nair, Sreenadhan S Pillai and Radhakrishna M Pillai

    BMC Bioinformatics 2010 11(Suppl 1):S2

    Published on: 18 January 2010

  2. Research

    Better score function for peptide identification with ETD MS/MS spectra

    Tandem mass spectrometry (MS/MS) has become the primary way for protein identification in proteomics. A good score function for measuring the match quality between a peptide and an MS/MS spectrum is instrument...

    Xiaowen Liu, Baozhen Shan, Lei Xin and Bin Ma

    BMC Bioinformatics 2010 11(Suppl 1):S4

    Published on: 18 January 2010

  3. Research

    Fast motif recognition via application of statistical thresholds

    Improving the accuracy and efficiency of motif recognition is an important computational challenge that has application to detecting transcription factor binding sites in genomic data. Closely related to motif...

    Christina Boucher and James King

    BMC Bioinformatics 2010 11(Suppl 1):S11

    Published on: 18 January 2010

  4. Research

    In silico screening of herbal and nanoparticle lead compounds for effectivity against H5N1, H1N1 neuraminidase and telomerase

    This article has been withdrawn from the public domain because of significant plagiarism. In the light of this situation, BioMed Central regrets that this article is no longer available. The authors apologise ...

    Sayak Ganguli, Manjita Mazumder, Protip Basu, Paushali Roy, Sayani Mitra and Abhijit Datta

    BMC Bioinformatics 2010 11(Suppl 1):S13

    Published on: 18 January 2010

    The Retraction Note to this article has been published in BMC Bioinformatics 2010 11:258

  5. Research

    Prediction of novel miRNAs and associated target genes in Glycine max

    Small non-coding RNAs (21 to 24 nucleotides) regulate a number of developmental processes in plants and animals by silencing genes using multiple mechanisms. Among these, the most conserved classes are microRN...

    Trupti Joshi, Zhe Yan, Marc Libault, Dong-Hoon Jeong, Sunhee Park, Pamela J Green, D Janine Sherrier, Andrew Farmer, Greg May, Blake C Meyers, Dong Xu and Gary Stacey

    BMC Bioinformatics 2010 11(Suppl 1):S14

    Published on: 18 January 2010

  6. Research

    Classification of protein sequences by means of irredundant patterns

    The classification of protein sequences using string algorithms provides valuable insights for protein function prediction. Several methods, based on a variety of different patterns, have been previously propo...

    Matteo Comin and Davide Verzotto

    BMC Bioinformatics 2010 11(Suppl 1):S16

    Published on: 18 January 2010

  7. Research

    AntiBP2: improved version of antibacterial peptide prediction

    Antibacterial peptides are one of the effecter molecules of innate immune system. Over the last few decades several antibacterial peptides have successfully approved as drug by FDA, which has prompted an inter...

    Sneh Lata, Nitish K Mishra and Gajendra PS Raghava

    BMC Bioinformatics 2010 11(Suppl 1):S19

    Published on: 18 January 2010

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