Volume 11 Supplement 7

Ninth International Conference on Bioinformatics (InCoB2010): Bioinformatics

Proceedings

Edited by Christian Schönbach, Kenta Nakai, Tin Wee Tan and Shoba Ranganathan

Asia Pacific Bioinformatics Network (APBioNet) Ninth International Conference on Bioinformatics (InCoB2010). Go to conference site.

Tokyo, Japan

26-28 September 2010

  1. Proceedings

    Robust and accurate prediction of noncoding RNAs from aligned sequences

    Computational prediction of noncoding RNAs (ncRNAs) is an important task in the post-genomic era. One common approach is to utilize the profile information contained in alignment data rather than single sequen...

    Yutaka Saito, Kengo Sato and Yasubumi Sakakibara

    BMC Bioinformatics 2010 11(Suppl 7):S3

    Published on: 15 October 2010

  2. Proceedings

    T3SEdb: data warehousing of virulence effectors secreted by the bacterial Type III Secretion System

    Effectors of Type III Secretion System (T3SS) play a pivotal role in establishing and maintaining pathogenicity in the host and therefore the identification of these effectors is important in understanding vir...

    Daniel Ming Ming Tay, Kunde Ramamoorthy Govindarajan, Asif M Khan, Terenze Yao Rui Ong, Hanif M Samad, Wei Wei Soh, Minyan Tong, Fan Zhang and Tin Wee Tan

    BMC Bioinformatics 2010 11(Suppl 7):S4

    Published on: 15 October 2010

  3. Proceedings

    A quantitatively-modeled homozygosity mapping algorithm, qHomozygosityMapping, utilizing whole genome single nucleotide polymorphism genotyping data

    Homozygosity mapping is a powerful procedure that is capable of detecting recessive disease-causing genes in a few patients from families with a history of inbreeding. We report here a homozygosity mapping alg...

    Huqun*, Shun-ichiro Fukuyama, Hiroyuki Morino, Hiroshi Miyazawa, Tomoaki Tanaka, Tomoko Suzuki, Masakazu Kohda, Hideshi Kawakami, Yasushi Okazaki, Kuniaki Seyama and Koichi Hagiwara

    BMC Bioinformatics 2010 11(Suppl 7):S5

    Published on: 15 October 2010

  4. Proceedings

    Network analysis of human protein location

    Understanding cellular systems requires the knowledge of a protein's subcellular localization (SCL). Although experimental and predicted data for protein SCL are archived in various databases, SCL prediction r...

    Gaurav Kumar and Shoba Ranganathan

    BMC Bioinformatics 2010 11(Suppl 7):S9

    Published on: 15 October 2010

  5. Proceedings

    Analysis and verification of the HMGB1 signaling pathway

    Recent studies have found that overexpression of the High-mobility group box-1 (HMGB1) protein, in conjunction with its receptors for advanced glycation end products (RAGEs) and toll-like receptors (TLRs), is ...

    Haijun Gong, Paolo Zuliani, Anvesh Komuravelli, James R Faeder and Edmund M Clarke

    BMC Bioinformatics 2010 11(Suppl 7):S10

    Published on: 15 October 2010

  6. Proceedings

    Modularity of Escherichia coli sRNA regulation revealed by sRNA-target and protein network analysis

    sRNAs, which belong to the non-coding RNA family and range from approximately 50 to 400 nucleotides, serve various important gene regulatory roles. Most are believed to be trans-regulating and function by being c...

    Timothy H Wu, Ian Yi-Feng Chang, Li-chieh Julie Chu, Hsuan-Cheng Huang and Wailap Victor Ng

    BMC Bioinformatics 2010 11(Suppl 7):S11

    Published on: 15 October 2010

  7. Proceedings

    Sensitivity analysis of dynamic biological systems with time-delays

    Mathematical modeling has been applied to the study and analysis of complex biological systems for a long time. Some processes in biological systems, such as the gene expression and feedback control in signal ...

    Wu Hsiung Wu, Feng Sheng Wang and Maw Shang Chang

    BMC Bioinformatics 2010 11(Suppl 7):S12

    Published on: 15 October 2010

  8. Proceedings

    Modeling the competition between lung metastases and the immune system using agents

    The Triplex cell vaccine is a cancer cellular vaccine that can prevent almost completely the mammary tumor onset in HER-2/neu transgenic mice. In a translational perspective, the activity of the Triplex vaccin...

    Marzio Pennisi, Francesco Pappalardo, Ariannna Palladini, Giordano Nicoletti, Patrizia Nanni, Pier-Luigi Lollini and Santo Motta

    BMC Bioinformatics 2010 11(Suppl 7):S13

    Published on: 15 October 2010

  9. Proceedings

    IKKβ inhibitor identification: a multi-filter driven novel scaffold

    Nuclear factor kappa B (NF-κB) is a chief nuclear transcription factor that controls the transcription of various genes; and its activation is tightly controlled by Inhibitor kappa B kinase (IKK). The irregula...

    Shanthi Nagarajan, Hyunah Choo, Yong Seo Cho, Kye Jung Shin, Kwang-Seok Oh, Byung Ho Lee and Ae Nim Pae

    BMC Bioinformatics 2010 11(Suppl 7):S15

    Published on: 15 October 2010