Volume 12 Supplement 13

Tenth International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB/ISCB-Asia 2011): Bioinformatics

Proceedings

Edited by Shoba Ranganathan, Christian Schoenbach, Sheila Nathan and Tin Wee Tan

Asia Pacific Bioinformatics Network (APBioNet) Tenth International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB2011/ISCB-Asia 2011). Go to conference site.

Kuala Lumpur, Malaysia

30 November - 2 December 2011

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  1. Introduction

    Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference

    The 2011 International Conference on Bioinformatics (InCoB) conference, which is the annual scientific conference of the Asia-Pacific Bioinformatics Network (APBioNet), is hosted by Kuala Lumpur, Malaysia, is ...

    Shoba Ranganathan, Christian Schönbach, Janet Kelso, Burkhard Rost, Sheila Nathan and Tin Wee Tan

    BMC Bioinformatics 2011 12(Suppl 13):S1

    Published on: 30 November 2011

  2. Proceedings

    Building gene expression profile classifiers with a simple and efficient rejection option in R

    The collection of gene expression profiles from DNA microarrays and their analysis with pattern recognition algorithms is a powerful technology applied to several biological problems. Common pattern recognitio...

    Alfredo Benso, Stefano Di Carlo, Gianfranco Politano, Alessandro Savino and Hafeez Hafeezurrehman

    BMC Bioinformatics 2011 12(Suppl 13):S3

    Published on: 30 November 2011

  3. Proceedings

    PTIGS-IdIt, a system for species identification by DNA sequences of the psbA-trnH intergenic spacer region

    DNA barcoding technology, which uses a short piece of DNA sequence to identify species, has wide ranges of applications. Until today, a universal DNA barcode marker for plants remains elusive. The rbc L and mat K...

    Chang Liu, Dong Liang, Ting Gao, Xiaohui Pang, Jingyuan Song, Hui Yao, Jianping Han, Zhihua Liu, Xiaojun Guan, Kun Jiang, Huan Li and Shilin Chen

    BMC Bioinformatics 2011 12(Suppl 13):S4

    Published on: 30 November 2011

  4. Proceedings

    Prediction of dinucleotide-specific RNA-binding sites in proteins

    Regulation of gene expression, protein synthesis, replication and assembly of many viruses involve RNA–protein interactions. Although some successful computational tools have been reported to recognize RNA bin...

    Michael Fernandez, Yutaro Kumagai, Daron M Standley, Akinori Sarai, Kenji Mizuguchi and Shandar Ahmad

    BMC Bioinformatics 2011 12(Suppl 13):S5

    Published on: 30 November 2011

  5. Proceedings

    PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments

    PB1-F2 is a major virulence factor of influenza A. This protein is a product of an alternative reading frame in the PB1-encoding RNA segment 2. Its presence of is dictated by the presence or absence of prematu...

    David S DeLuca, Derin B Keskin, Guang Lan Zhang, Ellis L Reinherz and Vladimir Brusic

    BMC Bioinformatics 2011 12(Suppl 13):S6

    Published on: 30 November 2011

  6. Proceedings

    Prediction of RNA-binding amino acids from protein and RNA sequences

    Many learning approaches to predicting RNA-binding residues in a protein sequence construct a non-redundant training dataset based on the sequence similarity. The sequence similarity-based method either takes ...

    Sungwook Choi and Kyungsook Han

    BMC Bioinformatics 2011 12(Suppl 13):S7

    Published on: 30 November 2011

  7. Proceedings

    HabiSign: a novel approach for comparison of metagenomes and rapid identification of habitat-specific sequences

    One of the primary goals of comparative metagenomic projects is to study the differences in the microbial communities residing in diverse environments. Besides providing valuable insights into the inherent str...

    Tarini Shankar Ghosh, Monzoorul Haque Mohammed, Hannah Rajasingh, Sudha Chadaram and Sharmila S Mande

    BMC Bioinformatics 2011 12(Suppl 13):S9

    Published on: 30 November 2011

  8. Proceedings

    Investigation and identification of protein γ-glutamyl carboxylation sites

    Carboxylation is a modification of glutamate (Glu) residues which occurs post-translation that is catalyzed by γ-glutamyl carboxylase in the lumen of the endoplasmic reticulum. Vitamin K is a critical co-facto...

    Tzong-Yi Lee, Cheng-Tsung Lu, Shu-An Chen, Neil Arvin Bretaña, Tzu-Hsiu Cheng, Min-Gang Su and Kai-Yao Huang

    BMC Bioinformatics 2011 12(Suppl 13):S10

    Published on: 30 November 2011

  9. Proceedings

    Revealing the functionality of hypothetical protein KPN00728 from Klebsiella pneumonia e MGH78578: molecular dynamics simulation approaches

    Previously, the hypothetical protein, KPN00728 from Klebsiella pneumoniae MGH78578 was the Succinate dehydrogenase (SDH) chain C subunit via structural prediction and molecular docking simulation studies. However...

    Sy Bing Choi, Yahaya M Normi and Habibah A Wahab

    BMC Bioinformatics 2011 12(Suppl 13):S11

    Published on: 30 November 2011

  10. Proceedings

    Assessment of predictive models for chlorophyll-a concentration of a tropical lake

    This study assesses four predictive ecological models; Fuzzy Logic (FL), Recurrent Artificial Neural Network (RANN), Hybrid Evolutionary Algorithm (HEA) and multiple linear regressions (MLR) to forecast chloro...

    Sorayya Malek, Sharifah Mumtazah Syed Ahmad, Sarinder Kaur Kashmir Singh, Pozi Milow and Aishah Salleh

    BMC Bioinformatics 2011 12(Suppl 13):S12

    Published on: 30 November 2011

  11. Proceedings

    Near-membrane ensemble elongation in the proline-rich LRP6 intracellular domain may explain the mysterious initiation of the Wnt signaling pathway

    LRP6 is a membrane protein crucial in the initiation of canonical Wnt/β-catenin signalling. Its function is dependent on its proline-serine rich intracellular domain. LRP6 has five PPP(S/T)P motifs that are ph...

    Chengcheng Liu, Mingxi Yao and Christopher WV Hogue

    BMC Bioinformatics 2011 12(Suppl 13):S13

    Published on: 30 November 2011

  12. Proceedings

    Network-based functional enrichment

    Many methods have been developed to infer and reason about molecular interaction networks. These approaches often yield networks with hundreds or thousands of nodes and up to an order of magnitude more edges. ...

    Christopher L Poirel, Clifford C Owens and T M Murali

    BMC Bioinformatics 2011 12(Suppl 13):S14

    Published on: 30 November 2011

  13. Proceedings

    Finding consistent disease subnetworks across microarray datasets

    While contemporary methods of microarray analysis are excellent tools for studying individual microarray datasets, they have a tendency to produce different results from different datasets of the same disease....

    Donny Soh, Difeng Dong, Yike Guo and Limsoon Wong

    BMC Bioinformatics 2011 12(Suppl 13):S15

    Published on: 30 November 2011

  14. Proceedings

    A quantitative analysis of monochromaticity in genetic interaction networks

    A genetic interaction refers to the deviation of phenotypes from the expected when perturbing two genes simultaneously. Studying genetic interactions help clarify relationships between genes, such as compensat...

    Chien-Hsiang Hsu, Tse-Yi Wang, Hsueh-Ting Chu, Cheng-Yan Kao and Kuang-Chi Chen

    BMC Bioinformatics 2011 12(Suppl 13):S16

    Published on: 30 November 2011

  15. Proceedings

    Correlation of cell membrane dynamics and cell motility

    Essential events of cell development and homeostasis are revealed by the associated changes of cell morphology and therefore have been widely used as a key indicator of physiological states and molecular pathw...

    Merlin Veronika, Roy Welsch, Alvin Ng, Paul Matsudaira and Jagath C Rajapakse

    BMC Bioinformatics 2011 12(Suppl 13):S19

    Published on: 30 November 2011

  16. Proceedings

    Construction and analysis of the protein-protein interaction networks for schizophrenia, bipolar disorder, and major depression

    Schizophrenia, bipolar disorder, and major depression are devastating mental diseases, each with distinctive yet overlapping epidemiologic characteristics. Microarray and proteomics data have revealed genes wh...

    Sheng-An Lee, Theresa Tsun-Hui Tsao, Ko-Chun Yang, Han Lin, Yu-Lun Kuo, Chien-Hsiang Hsu, Wen-Kuei Lee, Kuo-Chuan Huang and Cheng-Yan Kao

    BMC Bioinformatics 2011 12(Suppl 13):S20

    Published on: 30 November 2011

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