Volume 13 Supplement 3

ACM Conference on Bioinformatics, Computational Biology and Biomedicine 2011

Proceedings

Edited by Sun Kim and Wei Wang

Publication of this supplement has been supported by NSF support number NSF IIS1137427: III: Small: Women in Bioinformatics Initiative at ACM-BCB 2011.

ACM Conference on Bioinformatics, Computational Biology and Biomedicine 2011 (ACM-BCB).

Chicago, IL, USA

1-3 August 2011

  1. Proceedings

    Learning pair-wise gene functional similarity by multiplex gene expression maps

    The relationships between the gene functional similarity and gene expression profile, and between gene function annotation and gene sequence have been studied extensively. However, not much work has considered...

    Li An, Haibin Ling, Zoran Obradovic, Desmond J Smith and Vasileios Megalooikonomou

    BMC Bioinformatics 2012 13(Suppl 3):S1

    Published on: 21 March 2012

  2. Proceedings

    Metabolic network alignment in large scale by network compression

    Metabolic network alignment is a system scale comparative analysis that discovers important similarities and differences across different metabolisms and organisms. Although the problem of aligning metabolic n...

    Ferhat Ay, Michael Dang and Tamer Kahveci

    BMC Bioinformatics 2012 13(Suppl 3):S2

    Published on: 21 March 2012

  3. Proceedings

    Algorithms for optimizing cross-overs in DNA shuffling

    DNA shuffling generates combinatorial libraries of chimeric genes by stochastically recombining parent genes. The resulting libraries are subjected to large-scale genetic selection or screening to identify tho...

    Lu He, Alan M Friedman and Chris Bailey-Kellogg

    BMC Bioinformatics 2012 13(Suppl 3):S3

    Published on: 21 March 2012

  4. Proceedings

    Ab initio detection of fuzzy amino acid tandem repeats in protein sequences

    Tandem repetitions within protein amino acid sequences often correspond to regular secondary structures and form multi-repeat 3D assemblies of varied size and function. Developing internal repetitions is one o...

    Marco Pellegrini, Maria Elena Renda and Alessio Vecchio

    BMC Bioinformatics 2012 13(Suppl 3):S8

    Published on: 21 March 2012

  5. Proceedings

    Sensitive detection of pathway perturbations in cancers

    The normal functioning of a living cell is characterized by complex interaction networks involving many different types of molecules. Associations detected between diseases and perturbations in well-defined pa...

    Corban G Rivera, Brett M Tyler and TM Murali

    BMC Bioinformatics 2012 13(Suppl 3):S9

    Published on: 21 March 2012

  6. Proceedings

    Scalable global alignment for multiple biological networks

    Advances in high-throughput technology has led to an increased amount of available data on protein-protein interaction (PPI) data. Detecting and extracting functional modules that are common across multiple ne...

    Yu-Keng Shih and Srinivasan Parthasarathy

    BMC Bioinformatics 2012 13(Suppl 3):S11

    Published on: 21 March 2012

  7. Proceedings

    Comparative analysis and visualization of multiple collinear genomes

    Genome browsers are a common tool used by biologists to visualize genomic features including genes, polymorphisms, and many others. However, existing genome browsers and visualization tools are not well-suited...

    Jeremy R Wang, Fernando Pardo-Manuel de Villena and Leonard McMillan

    BMC Bioinformatics 2012 13(Suppl 3):S13

    Published on: 21 March 2012