Volume 16 Supplement 10

BioNLP Shared Task 2013: Part 1


Edited by Claire Nédellec, Jin-Dong Kim, Sampo Pyysalo, Sophia Ananiadou and Pierre Zweigenbaum

Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. Articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.

BioNLP Shared Task 2013. Go to conference site.

Sofia, Bulgaria

9 August 2013

  1. Research

    Overview of the gene regulation network and the bacteria biotope tasks in BioNLP'13 shared task

    We present the two Bacteria Track tasks of BioNLP 2013 Shared Task (ST): Gene Regulation Network (GRN) and Bacteria Biotope (BB). These tasks were previously introduced in the 2011 BioNLP-ST Bacteria Track as Bac...

    Robert Bossy, Wiktoria Golik, Zorana Ratkovic, Dialekti Valsamou, Philippe Bessières and Claire Nédellec

    BMC Bioinformatics 2015 16(Suppl 10):S1

    Published on: 23 June 2015

  2. Research

    Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013

    Since their introduction in 2009, the BioNLP Shared Task events have been instrumental in advancing the development of methods and resources for the automatic extraction of information from the biomedical lite...

    Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Andrew Rowley, Hong-Woo Chun, Sung-Jae Jung, Sung-Pil Choi, Jun'ichi Tsujii and Sophia Ananiadou

    BMC Bioinformatics 2015 16(Suppl 10):S2

    Published on: 23 June 2015

  3. Research

    Semi-supervised Learning for the BioNLP Gene Regulation Network

    The BioNLP Gene Regulation Task has attracted a diverse collection of submissions showcasing state-of-the-art systems. However, a principal challenge remains in obtaining a significant amount of recall. We arg...

    Thomas Provoost and Marie-Francine Moens

    BMC Bioinformatics 2015 16(Suppl 10):S4

    Published on: 23 June 2015

  4. Research

    Extracting biomedical events from pairs of text entities

    Huge amounts of electronic biomedical documents, such as molecular biology reports or genomic papers are generated daily. Nowadays, these documents are mainly available in the form of unstructured free texts, ...

    Xiao Liu, Antoine Bordes and Yves Grandvalet

    BMC Bioinformatics 2015 16(Suppl 10):S8

    Published on: 23 June 2015