Volume 8 Supplement 4

The Second Automated Function Prediction Meeting

Proceedings

Edited by Ana PC Rodrigues, Barry J Grant, Adam Godzik and Iddo Friedberg

The Second Automated Function Prediction Meeting. Go to conference site.

La Jolla, CA, USA

30 August - 1 September 2006

  1. Proceedings

    CORRIE: enzyme sequence annotation with confidence estimates

    Using a previously developed automated method for enzyme annotation, we report the re-annotation of the ENZYME database and the analysis of local error rates per class. In control experiments, we demonstrate t...

    Benjamin Audit, Emmanuel D Levy, Wally R Gilks, Leon Goldovsky and Christos A Ouzounis

    BMC Bioinformatics 2007 8(Suppl 4):S3

    Published on: 22 May 2007

  2. Proceedings

    The AnnoLite and AnnoLyze programs for comparative annotation of protein structures

    Advances in structural biology, including structural genomics, have resulted in a rapid increase in the number of experimentally determined protein structures. However, about half of the structures deposited b...

    Marc A Marti-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P Davis, Ursula Pieper, Joaquín Dopazo and Andrej Sali

    BMC Bioinformatics 2007 8(Suppl 4):S4

    Published on: 22 May 2007

  3. Proceedings

    Using structural motif descriptors for sequence-based binding site prediction

    Many protein sequences are still poorly annotated. Functional characterization of a protein is often improved by the identification of its interaction partners. Here, we aim to predict protein-protein interact...

    Andreas Henschel, Christof Winter, Wan Kyu Kim and Michael Schroeder

    BMC Bioinformatics 2007 8(Suppl 4):S5

    Published on: 22 May 2007