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Table 3 Estimated type I error rates for the modified KS statistic

From: GLOSSI: a method to assess the association of genetic loci-sets with complex diseases

Type of permutation Relative size of genes: out/in loci-set Proportion of p-value < 0.05 95% CI
Phenotype 50% 0.052 (0.038,0.066)
  100% 0.053 (0.039,0.067)
  200% 0.051 (0.037,0.065)
Gene 50% 0.27 (0.24,0.29)
  100% 0.046 (0.033,0.059)
  200% 0.004 (0,0.008)