BMC Bioinformatics

Table 3 Performance of various hybrid SVM models based on binary pattern & secondary structure developed using fixed number N (e.g., 6, 11) of nucleotides from 5'-end and varying number of nucleotides from 3'-end of sequence.

From: Prediction of guide strand of microRNAs from its sequence and secondary structure

Window size	N = 6 nt (from 5'-end)				N = 11 nt (from 5'-end)
	Sn	Sp	Ac	Mc	Sn	Sp	Ac	Mc
N+6	0.809	0.760	0.784	0.57	0.766	0.730	0.748	0.50
N+7	0.799	0.757	0.778	0.56	0.763	0.742	0.752	0.50
N+8	0.802	0.742	0.772	0.55	0.809	0.717	0.763	0.53
N+9	0.781	0.754	0.768	0.54	0.787	0.711	0.749	0.50
N+10	0.772	0.748	0.760	0.52	0.748	0.708	0.728	0.46
N+11	0.745	0.781	0.763	0.53	0.739	0.726	0.733	0.47
N+12	0.751	0.754	0.752	0.50	0.766	0.690	0.728	0.46
N+13	0.766	0.751	0.758	0.52	0.754	0.717	0.736	0.47
N+14	0.781	0.733	0.757	0.51	0.736	0.714	0.725	0.45
N+15	0.806	0.711	0.758	0.52	0.742	0.714	0.728	0.46
N+16	0.778	0.739	0.758	0.52	0.739	0.726	0.733	0.47
N+17	0.781	0.726	0.754	0.51	0.760	0.705	0.733	0.47
N+18	0.742	0.751	0.746	0.49	0.766	0.687	0.726	0.45

N: Number of nucleotides from 5'-end. N+6: N is number of nucleotides from 5'-end and 6 nt from 3'-end of a sequence.

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ISSN: 1471-2105

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