Table 2 Protein-protein interaction data sources incorporated in POINeT.
From: POINeT: protein interactome with sub-network analysis and hub prioritization
Data Source | Version or Download Date | Number of Interactions Included | References | References Details |
|---|---|---|---|---|
BioGRID | 2.0.37 | 202,244 | Stark et al. (2006) | Stark, C., Breitkreutz, B.J., Reguly, T., et al. (2006) BioGRID: a general repository for interaction datasets, Nucleic Acids Res, 34, D535–539. |
IntACT | 2008/2/11 | 121,560 | Hermjakob et al. (2004) | Hermjakob, H., Montecchi-Palazzi, L., Lewington, C., et al. (2004) IntAct: an open source molecular interaction database, Nucleic Acids Res, 32, D452–455. |
HPRD | version 7 | 37,107 | Peri, S. et al. (2003) | Peri, S. et al. (2003) Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Research. 13:2363–2371. |
MPact | 2005/12/22 | 12,955 | Ulrich G. et al. (2006) | Güldener U, Münsterkötter M, Oesterheld M, Pagel P, Ruepp A, Mewes HW, Stümpflen V(2006). MPact: the MIPS protein interaction resource on yeast. Nucl. Acids Res. 2006 34: D436–D441 |
DIP | 2008/1/14 | 50,048 | Xenarios et al. (2000) | Xenarios, I., Rice, D.W., Salwinski, L., et al. (2000) DIP: the database of interacting proteins, Nucleic Acids Res, 28, 289–291. |
MINT | 4.0 | 99,773 | Zanzoni et al. (2002) | Zanzoni, A., Montecchi-Palazzi, L., Quondam, M., et al. (2002) MINT: a Molecular INTeraction database, FEBS Lett, 513, 135–140. |
CYGD | 2007/1/25 | 33,984 | Guldener et al. (2005) | Guldener, U., Munsterkotter, M., Kastenmuller, G., et al. (2005) CYGD: the Comprehensive Yeast Genome Database, Nucleic Acids Res, 33, D364–368. |
BIND | 2006/5/25 | 41,603 | Bader et al. (2003) | Bader, G.D., Betel, D. and Hogue, C.W. (2003) BIND: the Biomolecular Interaction Network Database, Nucleic Acids Res, 31, 248–250. |
MIPS | 2007/1/1 | 1,363 | Mewes et al. (2004) | Mewes, H.W., Amid, C., Arnold, R., et al. (2004) MIPS: analysis and annotation of proteins from whole genomes, Nucleic Acids Res, 32, D41–44. |