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Table 4 50 K breakpoint recovery results at the presence of missing data

From: Most parsimonious haplotype allele sharing determination

 

0.5%

1%

1.5%

2%

2.5%

3%

Pedigree

Precision

Recall

Precision

Recall

Precision

Recall

Precision

Recall

Precision

Recall

Precision

Recall

2-2

0.991

0.974

1.000

0.972

1.000

0.972

1.000

0.966

0.996

0.964

1.000

0.964

2–3

0.999

0.982

0.999

0.975

0.996

0.973

0.991

0.976

0.999

0.979

0.998

0.971

2-3-1

0.991

0.975

0.999

0.975

0.996

0.972

0.990

0.976

0.999

0.979

0.998

0.971

2-3-2

0.992

0.972

0.990

0.977

0.995

0.973

0.998

0.960

0.994

0.980

0.995

0.972

2-3-3

0.996

0.977

0.992

0.971

0.996

0.968

0.993

0.969

0.994

0.973

0.994

0.968

2-3-5

0.988

0.973

0.988

0.965

0.990

0.965

0.986

0.969

0.987

0.973

0.982

0.967

2-4-3

0.996

0.981

0.994

0.974

0.997

0.979

0.995

0.969

0.991

0.969

0.991

0.969

2-5-4

0.997

0.974

0.996

0.969

0.980

0.971

0.997

0.966

0.998

0.968

0.996

0.954

2-5-5

0.989

0.977

0.994

0.969

0.996

0.972

0.996

0.968

0.984

0.967

0.992

0.969

2-6-5

0.998

0.976

0.995

0.966

0.997

0.966

0.978

0.962

0.982

0.953

0.992

0.953

Average

0.994

0.976

0.995

0.971

0.994

0.971

0.992

0.968

0.992

0.970

0.994

0.966

  1. Breakpoint recovery results: Average breakpoint recovery precision and recall by i Linker at the presence of 0.5–3% missing genotype data.