Skip to main content

Table 4 50 K breakpoint recovery results at the presence of missing data

From: Most parsimonious haplotype allele sharing determination

  0.5% 1% 1.5% 2% 2.5% 3%
Pedigree Precision Recall Precision Recall Precision Recall Precision Recall Precision Recall Precision Recall
2-2 0.991 0.974 1.000 0.972 1.000 0.972 1.000 0.966 0.996 0.964 1.000 0.964
2–3 0.999 0.982 0.999 0.975 0.996 0.973 0.991 0.976 0.999 0.979 0.998 0.971
2-3-1 0.991 0.975 0.999 0.975 0.996 0.972 0.990 0.976 0.999 0.979 0.998 0.971
2-3-2 0.992 0.972 0.990 0.977 0.995 0.973 0.998 0.960 0.994 0.980 0.995 0.972
2-3-3 0.996 0.977 0.992 0.971 0.996 0.968 0.993 0.969 0.994 0.973 0.994 0.968
2-3-5 0.988 0.973 0.988 0.965 0.990 0.965 0.986 0.969 0.987 0.973 0.982 0.967
2-4-3 0.996 0.981 0.994 0.974 0.997 0.979 0.995 0.969 0.991 0.969 0.991 0.969
2-5-4 0.997 0.974 0.996 0.969 0.980 0.971 0.997 0.966 0.998 0.968 0.996 0.954
2-5-5 0.989 0.977 0.994 0.969 0.996 0.972 0.996 0.968 0.984 0.967 0.992 0.969
2-6-5 0.998 0.976 0.995 0.966 0.997 0.966 0.978 0.962 0.982 0.953 0.992 0.953
Average 0.994 0.976 0.995 0.971 0.994 0.971 0.992 0.968 0.992 0.970 0.994 0.966
  1. Breakpoint recovery results: Average breakpoint recovery precision and recall by i Linker at the presence of 0.5–3% missing genotype data.