From: Profile analysis and prediction of tissue-specific CpG island methylation classes
 | Constitutively methylated | Unmethylated in sperm | Differentially methylated | Constitutively unmethylated | |||||
---|---|---|---|---|---|---|---|---|---|
Attributes | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 |
CpGcluster p-value1 | 0.112 | 0.130 | 0.229 | 0.047 | 0.020 | 0.024 | 0.042 | 0.033 | 0.053 |
O/E ratio1 | 0.239 | 0.253 | 0.380 | 0.263 | 0.255 | 0.241 | 0.239 | 0.208 | 0.269 |
CpG distance1 | 0.468 | 0.439 | 0.345 | 0.510 | 0.419 | 0.382 | 0.353 | 0.374 | 0.286 |
SD1 | 0.506 | 0.518 | 0.501 | 0.578 | 0.578 | 0.616 | 0.594 | 0.556 | 0.625 |
G+C content1 | 0.336 | 0.347 | 0.438 | 0.259 | 0.335 | 0.405 | 0.474 | 0.481 | 0.567 |
Repetitive content2 | 0.010 | 0.000 | 0.002 | 0.006 | 0.005 | 0.017 | 0.036 | 0.042 | 0.119 |
Repetitive elements2 | 0.004 | 0.000 | 0.004 | 0.012 | 0.004 | 0.037 | 0.066 | 0.078 | 0.192 |
PhastCon content3 | 0.722 | 0.700 | 0.521 | 0.063 | 0.057 | 0.102 | 0.101 | 0.081 | 0.092 |
PhastCon elements3 | 0.330 | 0.336 | 0.242 | 0.049 | 0.060 | 0.076 | 0.064 | 0.066 | 0.050 |
CG4 | 0.097 | 0.101 | 0.222 | 0.082 | 0.104 | 0.120 | 0.138 | 0.130 | 0.179 |
GC4 | 0.203 | 0.215 | 0.267 | 0.149 | 0.195 | 0.245 | 0.255 | 0.230 | 0.318 |
AA4 | 0.171 | 0.156 | 0.141 | 0.342 | 0.211 | 0.172 | 0.130 | 0.118 | 0.088 |
TT4 | 0.181 | 0.239 | 0.154 | 0.327 | 0.352 | 0.212 | 0.160 | 0.158 | 0.162 |
TA4 | 0.325 | 0.350 | 0.212 | 0.323 | 0.225 | 0.194 | 0.160 | 0.180 | 0.116 |
AT4 | 0.247 | 0.305 | 0.211 | 0.404 | 0.303 | 0.221 | 0.149 | 0.119 | 0.161 |
CA4 | 0.485 | 0.391 | 0.363 | 0.407 | 0.320 | 0.360 | 0.340 | 0.358 | 0.208 |
TG4 | 0.540 | 0.525 | 0.383 | 0.386 | 0.446 | 0.453 | 0.415 | 0.375 | 0.460 |
AC4 | 0.465 | 0.351 | 0.399 | 0.477 | 0.361 | 0.379 | 0.340 | 0.305 | 0.193 |
GT4 | 0.446 | 0.410 | 0.456 | 0.391 | 0.420 | 0.338 | 0.329 | 0.363 | 0.329 |
AG4 | 0.467 | 0.447 | 0.360 | 0.498 | 0.413 | 0.465 | 0.448 | 0.401 | 0.360 |
CT4 | 0.463 | 0.493 | 0.443 | 0.437 | 0.532 | 0.492 | 0.436 | 0.445 | 0.401 |
CC4 | 0.303 | 0.323 | 0.277 | 0.303 | 0.330 | 0.337 | 0.384 | 0.469 | 0.324 |
GG4 | 0.296 | 0.322 | 0.292 | 0.311 | 0.339 | 0.366 | 0.423 | 0.394 | 0.602 |
GA4 | 0.381 | 0.359 | 0.306 | 0.429 | 0.336 | 0.376 | 0.362 | 0.298 | 0.270 |
TC4 | 0.352 | 0.355 | 0.417 | 0.350 | 0.393 | 0.314 | 0.299 | 0.378 | 0.213 |
Bending5 | 0.597 | 0.596 | 0.567 | 0.376 | 0.507 | 0.639 | 0.695 | 0.699 | 0.789 |
Curvature5 | 0.506 | 0.547 | 0.410 | 0.669 | 0.712 | 0.653 | 0.545 | 0.561 | 0.405 |
Stacking energy5 | 0.771 | 0.776 | 0.671 | 0.840 | 0.790 | 0.739 | 0.711 | 0.721 | 0.666 |
Turns5 | 0.923 | 0.920 | 0.799 | 0.938 | 0.943 | 0.942 | 0.925 | 0.928 | 0.908 |
Degree of twist5 | 0.920 | 0.916 | 0.794 | 0.936 | 0.940 | 0.940 | 0.921 | 0.925 | 0.903 |
DNA cleavage5 | 0.192 | 0.187 | 0.234 | 0.139 | 0.160 | 0.191 | 0.209 | 0.189 | 0.285 |
Bases per turn5 | 0.074 | 0.078 | 0.195 | 0.060 | 0.055 | 0.057 | 0.073 | 0.070 | 0.090 |
Twist constraint5 | 0.763 | 0.749 | 0.635 | 0.837 | 0.780 | 0.768 | 0.736 | 0.724 | 0.654 |
Tilt constraint5 | 0.645 | 0.657 | 0.565 | 0.714 | 0.729 | 0.725 | 0.738 | 0.768 | 0.683 |
Roll constraint5 | 0.484 | 0.504 | 0.467 | 0.453 | 0.522 | 0.572 | 0.547 | 0.471 | 0.652 |
Shift constraint5 | 0.606 | 0.592 | 0.527 | 0.721 | 0.683 | 0.672 | 0.674 | 0.696 | 0.587 |
Slide constraint5 | 0.611 | 0.606 | 0.677 | 0.678 | 0.652 | 0.645 | 0.578 | 0.469 | 0.662 |
Rise constraint5 | 0.536 | 0.571 | 0.466 | 0.548 | 0.617 | 0.649 | 0.631 | 0.583 | 0.691 |