Table 6 Distribution of CGIs over the gene association classes
From: Profile analysis and prediction of tissue-specific CpG island methylation classes
Gene association class | Location of CGI | # CGI (%) |
|---|---|---|
Pseudogene | Within 1.5 kb of a pseudogene | 62 (12.53) |
TSS | Overlapping TSS | 146 (29.49) |
Promoter | Overlapping extended promoter region, (1.5 kb upstream of the TSS to end of the 5'UTR) | 178 (35.96) |
3'UTR | Overlapping 3' UTR and may overlap CDS | 12 (2.42) |
CDS | Overlapping protein coding region | 51 (10.30) |
Intron | Lies entirely within an Intron (excluding 3' and 5' UTRs) | 29 (5.86) |
NA | Outside of the gene environment | 17 (3.43) |