Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins

Table 4 Predicted ratios of sites in loop regions

Property	removed phos sites	training set phos sites	training set non-phos
All	86%	66% (53%)	53% (45%)
Ser	88%	68% (57%)	55% (54%)
Thr	93%	72% (64%)	53% (47%)
Tyr	75%	60% (41%)	51% (34%)

Predicted ratios of sites in loop regions as judged by prediction by DisEmbl 1.5 [37]. Percent of sites in loop regions according to the annotation of secondary structure of B, C, S, and T by DSSP is given in brackets.

ISSN: 1471-2105