Table 6 Example sentences used in testing of the SVM model
From: Improving classification in protein structure databases using text mining
Test sentence | SVM score |
|---|---|
These homologous proteins, designated the "enolase superfamily", include enolase as well as more metabolically specialized enzymes: mandelate racemase, galactonate dehydratase, glucarate dehydratase, muconate-lactonizing enzymes, N-acylamino acid racemase, beta-methylaspartate ammonia-lyase, and o-succinylbenzoate synthase. | 3.99 |
GlucD is a member of the mandelate racemase (MR) subgroup of the enolase superfamily, the members of which catalyze reactions that are initiated by abstraction of the alpha-proton of a carboxylate anion substrate. | 3.42 |
The structure of Neurospora crassa 3-carboxy-cis, cis-muconate lactonizing enzyme, a beta propeller cycloisomerase. | 1.41 |
The corresponding cDNA was amplified from a library of lobster muscle cDNA, and a sequence corresponding to residues 27–398 was determined. | -1.10 |
The values for kcat were reduced 4.5 × 10(3)-fold for (R)-®delate and 2.9 × 10(4)-fold for (S)-mandelate; the values for kcat/Km were reduced 3 × 10(4)-fold. | -3.31 |