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Table 3 Identified SNPs for WTCCC study.

From: MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study

SNP reference

Chromosome

Genotype association χ2P value

Permutation test P value

rs17163819

2

2.587 * 10-150

0.0042

rs10894818

12

1.751 * 10-120

0.0046

rs582397

3

1.089 * 10-82

0.0022

rs7596121

3

5.212 * 10-60

0.0022

rs16898558

6

1.718 * 10-52

0.0046

rs996877

13

1.566 * 10-44

0.0036

rs9387380

7

2.315 * 10-34

0.011

rs940153

9

1.032 * 10-33

0.0040

rs1456222

4

1.544 * 10-33

0.0048

rs1572075

5

1.474 * 10-23

0.0040

rs7192563

17

2.862 * 10-18

0.0030

rs17765376

15

3.277 * 10-18

0.0058

rs9532645

14

1.26 * 10-16

0.0028

rs10751815

11

1.036 * 10-15

0.0014

rs6975106

8

3.207 * 10-13

0.0028

  1. This table reports the top ranked SNPs and their genotype association χ2P values.