Skip to main content

Table 3 Identified SNPs for WTCCC study.

From: MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study

SNP reference Chromosome Genotype association χ2P value Permutation test P value
rs17163819 2 2.587 * 10-150 0.0042
rs10894818 12 1.751 * 10-120 0.0046
rs582397 3 1.089 * 10-82 0.0022
rs7596121 3 5.212 * 10-60 0.0022
rs16898558 6 1.718 * 10-52 0.0046
rs996877 13 1.566 * 10-44 0.0036
rs9387380 7 2.315 * 10-34 0.011
rs940153 9 1.032 * 10-33 0.0040
rs1456222 4 1.544 * 10-33 0.0048
rs1572075 5 1.474 * 10-23 0.0040
rs7192563 17 2.862 * 10-18 0.0030
rs17765376 15 3.277 * 10-18 0.0058
rs9532645 14 1.26 * 10-16 0.0028
rs10751815 11 1.036 * 10-15 0.0014
rs6975106 8 3.207 * 10-13 0.0028
  1. This table reports the top ranked SNPs and their genotype association χ2P values.