MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study

Table 5 Classification for Parkinson study.

Chromosome	Picked SNPs	Total SNPs	Prediction Accuracy	Randomized test accuracy
1	242	31,532	0.852	0.505
2	247	32,706	0.874	0.516
3	218	27,691	0.874	0.517
4	174	24,193	0.835	0.511
5	188	24,570	0.878	0.507
6	204	26,372	0.857	0.501
7	278	21,382	0.821	0.498
8	254	22,434	0.845	0.508
9	243	19,542	0.841	0.505
10	227	20,007	0.841	0.507
11	247	19,539	0.854	0.513
12	230	19,572	0.806	0.506
13	156	14,123	0.784	0.502
14	224	12,645	0.824	0.509
15	212	11,618	0.786	0.518
16	225	11,767	0.793	0.496
17	202	11,619	0.778	0.507
18	252	12,613	0.793	0.507
19	165	8,608	0.802	0.5
20	186	10,375	0.806	0.512
21	130	6,612	0.758	0.497
22	126	7,071	0.782	0.506
OVERALL	339	396,588	0.913	0.503

ISSN: 1471-2105