SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

BMC Bioinformatics

Table 1 Sensitivity and FPR of SFP detection in barley data.

The barley data were obtained from the supplementary data at http://naturalvariation.org/barley[10]. COL: coleoptile. CRO: seedling crown. GEM: embryo from germinating seed. LEA: seedling leaf. RAD: radicle (seminal root). The number of replicates was three (K = 3) for each tissue.
Ros^a: Method of Rostoks et al. [10]. The corresponding sensitivity and FPR were extracted from Rostoks et al. [10].
Gre^b: Method of Greenhall et al. [14]. Approximately 10% probes of 2,601 candidate probes were not used when calculating the sensitivity and FPR, because these probes did not meet the authors' selection criteria.

ISSN: 1471-2105