From: SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
SFP number | 1 | 1–3 | 1–5 | 1–10 |
---|---|---|---|---|
# of probe sets | 998 | 1699 | 1831 | 1901 |
# of SFP probes | 998 | 2602 | 3177 | 3689 |
 | SNEP | |||
Sensitivity | 0.772 | 0.747 | 0.717 | 0.653 |
FPR | 0.189 | 0.112 | 0.101 | 0.097 |
 | LRT | |||
Sensitivity | 0.800 | 0.748 | 0.711 | 0.666 |
FPR | 0.222 | 0.132 | 0.119 | 0.113 |