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Table 3 Sensitivity and FPR of SFP detection for various SFP numbers in the canonical rice data in which the genes were sufficiently expressed.

From: SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

SFP number

1

1–3

1–5

1–10

# of probe sets

998

1699

1831

1901

# of SFP probes

998

2602

3177

3689

 

SNEP

Sensitivity

0.772

0.747

0.717

0.653

FPR

0.189

0.112

0.101

0.097

 

LRT

Sensitivity

0.800

0.748

0.711

0.666

FPR

0.222

0.132

0.119

0.113