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Table 3 Sensitivity and FPR of SFP detection for various SFP numbers in the canonical rice data in which the genes were sufficiently expressed.

From: SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

SFP number 1 1–3 1–5 1–10
# of probe sets 998 1699 1831 1901
# of SFP probes 998 2602 3177 3689
  SNEP
Sensitivity 0.772 0.747 0.717 0.653
FPR 0.189 0.112 0.101 0.097
  LRT
Sensitivity 0.800 0.748 0.711 0.666
FPR 0.222 0.132 0.119 0.113