Table 2 Protein sequence features related to subcellular localization prediction.
From: Validating subcellular localization prediction tools with mycobacterial proteins
Secretion System and/or SP | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
TOOLS | SPI | SPII | Cyt | TM | Type I | Type II | Cell Wall | Extracell | Plasma membrane | Periplasm |
SignalP 2.0 (Sec-dependent) | X | X | X | |||||||
TatP 1.0 (altern system) | X | X | X | X | ||||||
LipoP 1.0 (Sec-dependent) | X | X | X | X | X | X | ||||
Phobius | X | X | X | |||||||
PA-SUB 2.5 | X | X | X | |||||||
Gpos-Ploc | X | X | X | X | X | |||||
PSORTb v.2.0.4 | X | X | X | X | ||||||