Figure 4
From: PanGEA: Identification of allele specific gene expression using the 454 technology
Effect of the most important parameters on the performance of PanGEA-BlastN. Values were calculated for mapping of 1000 randomly generated 250 bp fragments from D. melanogaster transcripts to the corresponding genes. Benchmarks were calculated in triplicate for five (or more) datapoints [see Additional file 5]. If not stated otherwise the following parameters were used: word length 11; minimum diagonal 3; low complexity threshold 20; ambiguity 12.