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Table 1 Comparision of the performance of PanGEA-BlastN with NCBI-BlastN [5].

From: PanGEA: Identification of allele specific gene expression using the 454 technology

  NCBI PanGEA PN1
Time 47 min 6 min -
Hits 23 512 24 600 23 436
Ambiguous 1 787 1 887 1 615
  1. More than 25,000 454-ESTs from D. melanogaster [4] were mapped to their genes. Ambiguity was reported if the score of the best hit differed from the score of the second best hit by less than 10.
  2. 1PanGEANCBI, i.e mapping results in which both tools agree