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Table 1 Comparision of the performance of PanGEA-BlastN with NCBI-BlastN [5].

From: PanGEA: Identification of allele specific gene expression using the 454 technology

 

NCBI

PanGEA

P ∩ N1

Time

47 min

6 min

-

Hits

23 512

24 600

23 436

Ambiguous

1 787

1 887

1 615

  1. More than 25,000 454-ESTs from D. melanogaster [4] were mapped to their genes. Ambiguity was reported if the score of the best hit differed from the score of the second best hit by less than 10.
  2. 1PanGEA ∩ NCBI, i.e mapping results in which both tools agree
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BMC Bioinformatics

ISSN: 1471-2105

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