Skip to main content

Table 10 Mixing of HIV-1 rules.

From: How to find simple and accurate rules for viral protease cleavage specificities

HIV.. ..A1 ..B1 ..C1 ..D1 ..E1 ..A2 ..B2 ..C2 ..D2 ..E2
HIVA1 4.56% 1.90% 0.36% 0.27% 1.60% 3.45% 0.43% 0.41% 0.43% 0.29%
HIVB1   4.29% 0.31% 0.19% 0.93% 0.73% 0.53% 0.31% 0.16% 0.28%
HIVC1    3.23% 0.14% 0.12% 0.29% 0.24% 0.25% 0.25% 0.26%
HIVD1     2.05% 0.17% 0.28% 0.12% 0.31% 0.20% 0.22%
HIVE1      3.50% 1.58% 0.20% 0.17% 0.22% 0.12%
HIVA2       4.97% 0.54% 0.53% 0.67% 0.32%
HIVB2        2.56% 0.62% 0.22% 0.63%
HIVC2         1.86% 0.53% 0.55%
HIVD2          1.53% 0.41%
HIVE2           2.70%
  1. There are 208 possible octamers.
  2. The fractions of these octamers that match to each OSRE HIV-1 rule, and to more than one rule, are shown here. The diagonal elements in the table show the fraction of the possible octamers that match one rule. The off-diagonal elements in the table show what fraction of the octamers that match both rules.