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Table 2 OSRE performance on artificial data set.

From: How to find simple and accurate rules for viral protease cleavage specificities

Artificial data set A

Artificial data set B

Data

OSRE rule

Data

OSRE rule

10

P2 ∈ {D,E,G,S,W,V}

102

P2 ∈ {P}

   

P1 ∈ {R}

102

P1' ∈ {A,I,L,M,F,V}

103

P4 ∉ {S}

   

P2 ∈ {P}

   

P1 ∈ {R}

103

P1' ∈ {A,I,L,M,F,V}

104

P4 ∉ {R,N,Q,E,K,S}

 

P2' ∉ {P}

 

P3 ∈ {Q}

   

P2 ∈ {P}

   

P1 ∈ {R}

  

105

P4 ∈ {A,G,I,L,M,F,T,V}

   

P3 ∈ {A,G,I,L,F,T,V,W}

   

P2 ∈ {P}

   

P1 ∈ {R}

   

P1' ∉ {D,E}

  1. Rules extracted with OSRE from the artificial data sets (cf. Table 1). The left column for each data set shows the number of peptides used to extract the rules.