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Table 3 Consensus rules for the HIV-1 PR data sets.

From: How to find simple and accurate rules for viral protease cleavage specificities

HIV-1 PR 746 peptide set

HIV-1 PR 1625 peptide set

HIVA1

P3 ∉ {N}

HIVA2

P4 ∉ {N,C,I}

 

P2 ∉ {Q,L,K,S}

 

P2 ∉ {Q,K,P,S}

 

P1 ∈ {G,L,M,F,Y}

 

P1 ∈ {L,M,F,Y}

 

P1' ∈ {H,I,L,M,F,P,Y,V}

 

P1' ∉ {R,N,D,C,Q,E,K,S,T}

 

P2' ∉ {R,N,D,G,H,K,P,S}

 

P2' ∉ {R,N,D,G,H,K}

   

P3' ∉ { K }

HIVB1

P1 ∉ {Q,K,T,V}

HIVB2

P4 ∉ {N,C,I,K,M,F,W,Y}

 

P1' ∈ {L,F,P,Y}

 

P3 ∉ {N,C,V}

 

P2' ∉ {R,N,D,G,H,K,S,T,Y}

 

P2 ∉ {K}

 

P3' ∉ {N,H,I,L,K,P,S}

 

P1 ∉ {R,Q,E,K,T}

 

P4' ∉ {N,Q,I,M,V}

 

P1' ∉ {R,N,D,C,Q,E,K,S,T}

   

P2' ∈ {A,C,Q,E,I,L,S,V}

   

P3' ∈ {A,C,Q,M,F,Y}

HIVC1

P2 ∉ {Q,L,K,S}

HIVC2

P4 ∉ {N,C,I,K,M,F,W,Y}

 

P1 ∉ {K,T,V}

 

P3 ∉ {N,V}

 

P2' ∈ {E}

 

P2 ∈ {A,C,I,M,F,V}

 

P3' ∉ {N}

 

P1 ∉ {R,Q,E,K,P,T}

   

P1' ∉ {R,N,D,C,Q,E,K,S,T}

   

P2' ∈ {A,C,Q,I,L,S,V}

   

P3' ∉ {N,K,P}

HIVD1

P3 ∉ {N,C,S,V}

HIVD2

P4 ∉ {C,I,Y}

 

P2 ∈ {I,V}

 

P3 ∉ {N,V}

 

P1 ∉ {Q,K,P,T,V}

 

P2 ∈ {A,C,I,M,F,T,V}

 

P1' ∉ {D,Q,K,S}

 

P1 ∈ {A,L,M,F,Y}

 

P2' ∉ {R,N,D,G,K}

 

P1' ∉ {K}

 

P3' ∉ {N}

 

P2' ∈ {A,E,I,L,S,V}

 

P4' ∉ {A,N,Q,I,M,W,Y,V}

 

P3' ∉ {N,I,K,P}

HIVE1

P1 ∈ {L,M,F,Y}

HIVE2

P2 ∈ {A,C,I,M,F,V}

 

P1' ∈ {L,M,F,P,Y}

 

P1 ∉ {R,Q,E,K}

 

P4' ∉ {A,N,I,M,Y,V}

 

P2' ∈ {A,C,Q,E,I,L,S,T,V}

   

P3' ∈ {A,C,M,F,Y}

  1. Consensus rules for the HIV-1 PR data sets. The rules are listed in the priority order given by the OSRE method. The text in italics is the label for each rule.