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Table 6 Consensus rules for the HCV NS3 data set.

From: How to find simple and accurate rules for viral protease cleavage specificities

HCV NS3 peptide set

HCVA

P3 ∉ {K}

 

P1 ∈ {C}

 

P1' ∉ {P}

HCVB

P6 ∈ {A,N,D,C,E,I,K,M,F,P}

 

P5 ∉ {I}

 

P4 ∉ {N,D,Q,G,L,F,P,S,V}

 

P3 ∈ {R,E,G,I,L,T,V}

 

P1 ∉ {R,P,Y}

 

P1' ∈ {A,R,N,D,H,M,S,W,Y}

 

P3' ∉ {Q,E,I,L,M,P,V}

HCVC

P4 ∉ {S}

 

P3 ∈ {R,E,G,I,F,T,V}

 

P2 ∉ {C,L,S,T}

 

P1 ∉ {R,D,P,Y}

 

P1' ∉ {C,Q,E,G,I,L,K,P,T,V}

 

P2' ∉ {P}

 

P3' ∉ {P}

 

P4' ∉ {A,R,D,E,G,I,P,S,T}

HCVD

P6 ∈ {C}

 

P4 ∈ {R,C,E,I,M,T,V}

 

P4' ∈ {C,W,Y,V}

  1. Consensus rules for the HCV NS3 data set (939 peptides). The rules are listed in the priority order given by the OSRE method. The text in italics is the label for each rule.