Skip to main content

Table 6 Consensus rules for the HCV NS3 data set.

From: How to find simple and accurate rules for viral protease cleavage specificities

HCV NS3 peptide set
HCVA P3 {K}
  P1 {C}
  P1' {P}
HCVB P6 {A,N,D,C,E,I,K,M,F,P}
  P5 {I}
  P4 {N,D,Q,G,L,F,P,S,V}
  P3 {R,E,G,I,L,T,V}
  P1 {R,P,Y}
  P1' {A,R,N,D,H,M,S,W,Y}
  P3' {Q,E,I,L,M,P,V}
HCVC P4 {S}
  P3 {R,E,G,I,F,T,V}
  P2 {C,L,S,T}
  P1 {R,D,P,Y}
  P1' {C,Q,E,G,I,L,K,P,T,V}
  P2' {P}
  P3' {P}
  P4' {A,R,D,E,G,I,P,S,T}
HCVD P6 {C}
  P4 {R,C,E,I,M,T,V}
  P4' {C,W,Y,V}
  1. Consensus rules for the HCV NS3 data set (939 peptides). The rules are listed in the priority order given by the OSRE method. The text in italics is the label for each rule.