Figure 8From: Tableau-based protein substructure search using quadratic programmingSuperposition of β -grasp query hits. (a) Superposition of the top 20 hits to the β-grasp query structure d1ubia_. This superposition is generated by simply finding the orthogonal transformation that minimizes the RMSD between the C α atoms in the most central residues of the SSEs that are matched between the query and the hit structure. (b) Multiple alignment of the top 20 hits generated with MUSTANG [2]. Five structures are missing as they have multiple NMR models, which MUSTANG cannot currently handle. Figures were generated with PyMOL [63].Back to article page