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Figure 8 | BMC Bioinformatics

Figure 8

From: Tableau-based protein substructure search using quadratic programming

Figure 8

Superposition of β -grasp query hits. (a) Superposition of the top 20 hits to the β-grasp query structure d1ubia_. This superposition is generated by simply finding the orthogonal transformation that minimizes the RMSD between the C α atoms in the most central residues of the SSEs that are matched between the query and the hit structure. (b) Multiple alignment of the top 20 hits generated with MUSTANG [2]. Five structures are missing as they have multiple NMR models, which MUSTANG cannot currently handle. Figures were generated with PyMOL [63].

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