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Table 1 AUC and time for some widespread folds.

From: Tableau-based protein substructure search using quadratic programming

    distance information
    without with
Fold SCOP sid # SSEs AUC time AUC time
β-grasp d1ubia_ 8 0.80 0 h 47 m 0.92 0 h 32 m
Key-barrel d1tttb1 9 0.80 0 h 50 m 0.97 0 h 50 m
Immunoglobulin d1ae6h1 13 0.89 1 h 47 m 0.95 1 h 53 m
Plait (ferredoxin) d1bhne_ 15 0.61 1 h 53 m 0.85 2 h 18 m
GFP-like d1h6rb_ 17 1.00 3 h 06 m 0.99 3 h 06 m
Jelly-roll d2phlb1 19 0.87 4 h 24 m 0.93 5 h 13 m
Tim-barrel d1tima_ 21 0.99 4 h 31 m 1.00 4 h 30 m
NAD-binding fold d1f6dc_ 30 0.98 14 h 45 m 0.99 16 h 33 m
  1. Area under ROC curve (AUC) and time taken for searches for several structural folding patterns against the ASTRAL SCOP 95% sequence identity non-redundant database consisting of 15273 domains using discrete tableaux, both with and without incorporating SSE distance information. Times (in hours and minutes) reported are elapsed times using the sparse matrix (UMFPACK) implementation on an Intel Xeon 3.2 GHz machine with 8 GB memory running Linux. The table is sorted by query size (number of SSEs in query).