From: Transmembrane protein topology prediction using support vector machines
SVM | Window size | Kernel | MCC |
---|---|---|---|
TM Helix/¬TM Helix | 33 | RBF | 0.80 |
Inside Loop/Outside Loop | 35 | Polynomial* | 0.63 |
Re-entrant Helix/¬Re-entrant Helix | 27 | RBF | 0.34 |
Signal Peptide/¬Signal Peptide | 27 | RBF | 0.76 |
TM Protein/Globular Protein | 33 | RBF | 0.78 |