Table 4 Results for TM/globular protein discrimination rates.
From: Transmembrane protein topology prediction using support vector machines
Method | Algorithm | False positive rate | False negative rate |
|---|---|---|---|
MEMSAT-SVM | SVM | 0.00% | 0.44% |
MEMSAT3 | NN | 0.50% | 0.50% |
SOSUI | Hydrophobicity analysis | 0.33% | 1.10% |
OCTOPUS | NN + HMM | 0.00% | 2.51% |
PHOBIUS | HMM | 2.72% | 0.44% |