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Table 4 Results for TM/globular protein discrimination rates.

From: Transmembrane protein topology prediction using support vector machines

Method Algorithm False positive rate False negative rate
MEMSAT-SVM SVM 0.00% 0.44%
MEMSAT3 NN 0.50% 0.50%
SOSUI Hydrophobicity analysis 0.33% 1.10%
OCTOPUS NN + HMM 0.00% 2.51%
PHOBIUS HMM 2.72% 0.44%