Figure 3From: IRSS: a web-based tool for automatic layout and analysis of IRES secondary structure prediction and searching system in silicoThe IRSS searching results from entire UTRdb in different length parameters. There are three length parameters applied in this study, L = 100 (A and D), 250 (B and E) and 400 (C and F). To decide the best R value, linear discriminant analysis was applied in each window shown as d, e and f. The best R values are 1.54, 159 and 1.55 for L = 100, 250 and 400 respectively after calculation. Curves of positive and negative IRES elements represent the R value distribution. The original alignment score of every alignment window for all UTRdb data shown as (A), (B) and (C).Back to article page