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Table 1 Top records of IRSS predicted potential IRES elements from UTR database in different L* parameters (without Flaviviridae)

From: IRSS: a web-based tool for automatic layout and analysis of IRES secondary structure prediction and searching system in silico

L

Accession No

Position

SLEN§

Ratio

Description

100

J02342

185

101

1.57

Rous sarcoma virus

100

X51863

419

101

1.57

Avian sarcoma virus

100

AF447398

207

98

1.56

Peanut clump virus

100

AB032469

3640

97

1.55

Hop latent virus

100

AB085612

3607

95

1.55

Cucumber yellows virus

100

AJ295949

3567

101

1.55

Zucchini green mottle mosaic virus

100

AY101611

5863

99

1.55

Visna virus

100

U56902

2350

96

1.55

Citrus tristeza virus

100

X85215

332

98

1.55

Carnation Italian ringspot virus

100

Z54206

1195

100

1.55

Bovine herpesvirus 1

100

AJ011933

5064

100

1.54

Tobacco mosaic virus

250

AY064719

433

223

1.85

Simian picornavirus 12

250

AY064715

434

223

1.79

Simian picornavirus 3

250

AF406813

191

250

1.78

Porcine enterovirus 8

250

AY064708

452

223

1.78

Simian picornavirus 1

250

AF304460

13311

234

1.77

Human coronavirus 229E

250

AY064720

440

220

1.77

Simian picornavirus 15

250

U07131

1622

223

1.77

Feline calicivirus

250

D10652

1060

214

1.75

Rous sarcoma virus

250

AF026278

3154

219

1.74

Grapevine Rupestris stem pitting associated virus

250

AY008714

7423

195

1.74

Human immunodeficiency virus 1

400

Y18368

831

192

1.76

Citrus tristeza virus

400

AY008718

7412

195

1.74

Human immunodeficiency virus 1

400

X78602

1517

183

1.73

Peanut clump virus

400

AF037268

11241

198

1.72

Grapevine leafroll-associated virus 3

400

AF017149

6668

197

1.71

Hendra virus

400

AB015146

1112

227

1.70

Cucumber green mottle mosaic virus

400

AF201929

938

168

1.70

Murine hepatitis virus strain 2

400

AF280799

5143

197

1.70

Mumps virus

400

AY150312

5533

189

1.70

Porcine reproductive and respiratory syndrome virus

400

AY274119

11849

194

1.70

SARS coronavirus Tor2

400

D10371

4863

194

1.70

Phocine distemper virus

400

L04998

684

295

1.70

Human herpesvirus 5

  1. *length of sequence fragments
  2. §sequence length