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Table 1 Top records of IRSS predicted potential IRES elements from UTR database in different L* parameters (without Flaviviridae)

From: IRSS: a web-based tool for automatic layout and analysis of IRES secondary structure prediction and searching system in silico

L Accession No Position SLEN§ Ratio Description
100 J02342 185 101 1.57 Rous sarcoma virus
100 X51863 419 101 1.57 Avian sarcoma virus
100 AF447398 207 98 1.56 Peanut clump virus
100 AB032469 3640 97 1.55 Hop latent virus
100 AB085612 3607 95 1.55 Cucumber yellows virus
100 AJ295949 3567 101 1.55 Zucchini green mottle mosaic virus
100 AY101611 5863 99 1.55 Visna virus
100 U56902 2350 96 1.55 Citrus tristeza virus
100 X85215 332 98 1.55 Carnation Italian ringspot virus
100 Z54206 1195 100 1.55 Bovine herpesvirus 1
100 AJ011933 5064 100 1.54 Tobacco mosaic virus
250 AY064719 433 223 1.85 Simian picornavirus 12
250 AY064715 434 223 1.79 Simian picornavirus 3
250 AF406813 191 250 1.78 Porcine enterovirus 8
250 AY064708 452 223 1.78 Simian picornavirus 1
250 AF304460 13311 234 1.77 Human coronavirus 229E
250 AY064720 440 220 1.77 Simian picornavirus 15
250 U07131 1622 223 1.77 Feline calicivirus
250 D10652 1060 214 1.75 Rous sarcoma virus
250 AF026278 3154 219 1.74 Grapevine Rupestris stem pitting associated virus
250 AY008714 7423 195 1.74 Human immunodeficiency virus 1
400 Y18368 831 192 1.76 Citrus tristeza virus
400 AY008718 7412 195 1.74 Human immunodeficiency virus 1
400 X78602 1517 183 1.73 Peanut clump virus
400 AF037268 11241 198 1.72 Grapevine leafroll-associated virus 3
400 AF017149 6668 197 1.71 Hendra virus
400 AB015146 1112 227 1.70 Cucumber green mottle mosaic virus
400 AF201929 938 168 1.70 Murine hepatitis virus strain 2
400 AF280799 5143 197 1.70 Mumps virus
400 AY150312 5533 189 1.70 Porcine reproductive and respiratory syndrome virus
400 AY274119 11849 194 1.70 SARS coronavirus Tor2
400 D10371 4863 194 1.70 Phocine distemper virus
400 L04998 684 295 1.70 Human herpesvirus 5
  1. *length of sequence fragments
  2. §sequence length