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Table 2 Result from PolyMin phase I, showing 9 polymorphisms, selected for the differentiation of 13 haplotypes (reduced data set for demonstration).

From: "PolyMin": software for identification of the minimum number of polymorphisms required for haplotype and genotype differentiation

    

1

2

3

4

5

6

7

8

9

10

11

12

13

no

pm

Bp

rp

SEQ09

SEQ10

SEQ11

SEQ14

SEQ12

SEQ13

SEQ03

SEQ02

SEQ01

SEQ04

SEQ05

SEQ06

SEQ07

SEQ08

1

7

8

1

-

-

-

-

-

-

A

A

A

A

A

A

A

2

14

15

4

A

G

G

G

G

G

A

A

A

A

A

G

G

3

62

63

1

-

-

-

-

-

-

-

A

A

A

A

A

-

4

3

4

9

C

A

A

C

C

C

C

C

C

C

C

C

C

5

13

14

1

-

-

-

-

-

-

-

-

-

A

A

A

A

6

63

64

1

C

C

C

C

C

C

T

C

T

C

T

C

C

7

12

13

1

A

A

A

-

-

A

A

A

A

A

A

A

A

8

22

23

19

-

-

-

-

A

A

-

-

-

-

-

-

-

9

52

53

2

A

-

A

A

A

A

A

A

A

A

A

A

A

  1. Lines in bold: polymorphisms that will be excluded from the set, when using PolyMin phase II, as they do not contribute to the differentiation of the 13 haplotypes.
  2. no – polymorphism number,
  3. pm – name of the polymorphism,
  4. bp – position of the polymorphism within the sequence,
  5. rp – number of redundant polymorphisms found in the whole sequence.