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Table 1 Score thresholds given by different methods of analysis.

From: Improved results in proteomics by use of local and peptide-class specific false discovery rates

Measurement Score threshold in E. coli dataset Score threshold in serum dataset
Mascot 0 0
FDR 3.22 -2.1
Local FDR 13.6 7.2
CNC Local FDR -0.67, 27.88 -3.6, 19.6