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Table 1 Score thresholds given by different methods of analysis.

From: Improved results in proteomics by use of local and peptide-class specific false discovery rates

Measurement

Score threshold in E. coli dataset

Score threshold in serum dataset

Mascot

0

0

FDR

3.22

-2.1

Local FDR

13.6

7.2

CNC Local FDR

-0.67, 27.88

-3.6, 19.6