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Table 1 The relationships between high level MIFlowCyt terms and FuGEFlow classes

From: FuGEFlow: data model and markup language for flow cytometry

MIFlowCyt term

 

FuGEFlow class

Experiment Overview

1.1 Purpose

FuGE::Bio::Investigation::HigherLevelAnalysis

 

1.2 Keywords

FuGE::Bio::Investigation::Investigation

 

1.3 Experiment Variables

FuGE::Bio::Investigation::Investigation

 

1.4 Organization

FuGE::Common::Audit::ContactRole

 

1.5 Primary Contact

FuGE::Common::Audit::ContactRole

 

1.6 Date

FuGE::Bio::Investigation::Investigation

 

1.7 Conclusion

FuGE::Bio::Investigation::HigherLevelAnalysis

 

1.8 Quality Control Measures

FuGE::Bio::Investigation::InvestigationComponent

 

1.9 Other Relevant Experiment Information

FuGE::Bio::Investigation::Investigation

Specimen Details

2.1 Specimen Material Description

FCM::Sample; FCM::Organism

 

2.2 Sample Treatment(s) Description

FuGE::Common::Protocol::GenericProtoclApplication

 

2.3 Fluorescence Reagent Description

FCM::FluorescentReagent

Instrument Details

3.1 Manufacturer

FuGE::Equipment; FCM::Cytometer

 

3.2 Model

FuGE::Equipment; FCM::Cytometer

 

3.3 Configuration and Settings

FuGE::Equipment

 

3.4 Other Relevant Instrument Settings

FCM::Cytometer

Data Analysis Details

4.1 List-Mode Data File

FCM::ListModeDataFile

 

4.2 Compensation Details

FCM::CompensationProtocol

 

4.3 Gating (Data Filtering) Details

FCM::DataFilteringProtocol

 

4.4 Data Transformation Details

FCM::DataTransformationProtocol