From: GenomeGraphs: integrated genomic data visualization with R
Class | Description |
---|---|
gdObject | the root class of the system, never directly instantiated |
DisplayPars | class managing various plotting parameters |
Gene | class representing a gene |
GeneRegion | class defining a region of a chromosome, generally a set of genetic elements (genes) |
Transcript | class defining a transcript |
TranscriptRegion | class defining a region of a chromosome, generally a set of genetic elements (transcripts) |
Ideogram | class representing an ideogram |
Title | class to draw a title |
Legend | class to draw a legend |
GenomeAxis | class to draw an axis |
AnnotationTrack | class used to represent custom annotation |
Overlay | root class for overlays, never directly instantiated |
RectangleOverlay | class to represent rectangular regions of interest |
TextOverlay | class to draw text on plots |
Segmentation | class to draw horizontal lines in various sets of data |
GenericArray | class to draw data from microarrays. |
ExonArray | class to draw data from exon microarrays. |
GeneModel | class to draw custom gene models (intron-exon structures) |
BaseTrack | class to draw arbitrary data at a given base |
MappedRead | class to plot sequencing reads that are mapped to the genome |