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Table 5 The 15 KEGG pathways most relevant to the extracted gene modules

From: Clique-based data mining for related genes in a biomedical database

Rank KEGG pathway [number of genes] Gene module size r J (intersection/union)
1 hsa00601 Blood Group Glycolipid Biosynthesis – Lact Series [6] 4 0.667 (4/6)
2 hsa00920 Sulfur Metabolism [7] 4 0.571 (4/7)
3 hsa00532 Chondroitin/Heparan Sulfate Biosynthesis [8] 6 0.556 (5/9)
4 hsa00140 C21-Steroid Hormone Metabolism [11] 7 0.500 (6/12)
5 hsa00040 Pentose and Glucuronate Interconversions [10] 5 0.500 (5/10)
6 hsa00400 Phenylalanine, Tyrosine and Tryptophan Biosynthesis [8] 3 0.375 (3/8)
7 hsa00511 Glycoprotein Degradation [8] 3 0.375 (3/8)
8 hsa03050 Proteasome [14] 5 0.357 (5/14)
9 hsa03020 RNA Polymerase [15] 5 0.333 (5/15)
10 hsa00530 Aminosugars Metabolism [9] 3 0.333 (3/9)
11 hsa00580 Phospholipid Degradation [9] 3 0.333 (3/9)
12 hsa00062 Fatty Acid Biosynthesis (path 2) [6] 2 0.333 (2/6)
13 hsa00602 Blood Group Glycolipid Biosynthesis – Neolact Series [6] 2 0.333 (2/6)
14 hsa00271 Methionine Metabolism [10] 3 0.300 (3/10)
15 hsa00790 Folate Biosynthesis [10] 3 0.300 (3/10)