Figure 3
From: Iterative refinement of structure-based sequence alignments by Seed Extension
Average execution times. The total wall clock times for each method to align 3,591 pairs and for the RSE to refine them were recorded on Dual 2 GHz PowerPC G5 with 4GB memory, running Mac OS X version 10.3.9. The pre-processing times for MATRAS and VAST were not included. The x- and y-axes show the methods and the average times in seconds, respectively. The times taken by the methods and by the RSE are shown in black bars and red tips, respectively.