Skip to main content

Table 6 The experimental results for pedigrees P5 to P8.

From: Linked region detection using high-density SNP genotype data via the minimum recombinant model of pedigree haplotype inference

  P5 P6 P7 P8
No. of Breakpoints 20.81 (31.60) 26.37 (47.27) 38.83 (108.4) 44.65 (145.4)
precision 0.86 (0.45) 0.96 (0.41) 0.97 (0.26) 0.90 (0.23)
recall 0.82 (0.66) 0.94 (0.71) 0.93 (0.71) 0.92 (0.76)
length of real linked region (cM) 38.58 19.77 21.92 12.37
length of found linked region (cM) 41.00 (43.28) 22.98 (23.51) 23.37 (24.57) 16.04 (16.20)
overlap/real 1.00 (1.00) 1.00 (1.00) 1.00 (1.00) 1.00 (1.00)
overlap/found 0.93 (0.93) 0.86 (0.84) 0.91 (0.91) 0.79 (0.78)
linked region recovery 1.00
(232/285)
1.00
(266/285)
1.00
(228/285)
1.00
(265/285)
  1. The meaning of each line is the same as in Table 2.