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Table 2 GO enrichment.

From: Transcriptional programs: Modelling higher order structure in transcriptional control

TP Factors GO term   GO description annotated p-value
28 9 GO:0001889 BP liver development 5/7 4.7e-06
TP Targets GO term   GO description annotated p-value
2 669 GO:0004842 MF ubiquitin-protein ligase activity 16/121 8.7e-06
2 669 GO:0051216 BP cartilage development 12/71 9.0e-06
3 1474 GO:0005550 MF pheromone binding 11/27 2.8e-06
4 1419 GO:0005132 MF interferon-alpha/beta receptor binding 7/8 1.2e-07
5 1510 GO:0005132 MF interferon-alpha/beta receptor binding 6/8 7.3e-06
12 198 GO:0000786 CC nucleosome 14/136 4.2e-10
12 198 GO:0005634 CC nucleus 84/4115 8.2e-08
12 198 GO:0003677 MF DNA binding 54/1993 4.0e-07
12 198 GO:0003697 MF single-stranded DNA binding 6/37 4.2e-06
12 198 GO:0006334 BP nucleosome assembly 14/147 1.9e-09
12 198 GO:0006260 BP DNA replication 16/151 2.4e-06
13 372 GO:0004984 MF olfactory receptor activity 50/1001 5.4e-09
13 372 GO:0007186 BP G-protein coupled receptor protein signa... 81/1968 1.4e-09
15 230 GO:0034097 BP response to cytokine stimulus 5/15 1.0e-06
18 268 GO:0004984 MF olfactory receptor activity 43/1001 6.0e-11
18 268 GO:0007166 BP cell surface receptor linked signal tran... 74/2606 2.4e-08
18 268 GO:0007608 BP sensory perception of smell 10/90 7.9e-07
25 275 GO:0004556 MF alpha-amylase activity 4/5 2.1e-07
28 167 GO:0007186 BP G-protein coupled receptor protein signa... 38/1968 4.1e-06
55 54 GO:0032183 MF SUMO binding 2/2 1.0e-05
  1. We tested each of the factors and target genes associated with each of the 68 transcriptional programs for enrichment of GO terms across the three GO ontologies: biological process (BP), molecular function (MF) and cellular component (CC). The number of factors (resp. targets) associated with the program is displayed followed by information about the GO term. 'Annotated' shows the number of factors (resp. targets) annotated with the term in the program compared to the total numbers of factors (resp. targets) annotated with the term. The p-values are not corrected for multiple testing. Based on a bootstrap analysis described in the Methods section any p-value below 1e-04 might be deemed significant at the 0.01 level.