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Table 1 Available data fields, their type and whether they are sortable or filterable.

From: mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics

Field

Type

Comment

Sortable/Filterable

Specifications Component

   

ID

string

identification number

yes/yes

Name

string

identifier

yes/yes

Molecular weight

double

molecular weight

yes/yes

Formula

string

chemical formula

no/yes

IUPAC-name

string

IUPAC-name

no/yes

SMILES

string

SMILES-code [21]

no/yes

InChI

string

InChI-code [16]

no/yes

Identification numbers

2D array1)

e.g. KEGG compound number [13]

no/yes

Synonyms

array of strings

synonyms

no/yes

Derivatives

   

ID

string

identification number

yes/yes

Derivative

string

identifier

yes/yes

Monoisotopic mass

double

monoisotopic mass [22]

yes/yes

Retention time (min)

double

Retention time

yes/yes

Retention index

double

Kováts retention index [10]

yes/yes

RI positive drift

double

Positive drift of retention index

yes/yes

RI negative drift

double

Negative drift of retention index

yes/yes

Alkanes

2D array1)

reference list of alkanes

no/no

Mass traces

array of doubles

list of reference ions for quantification

no/yes

Comment

   

Comment

string

commentaries

no/yes

Structure

   

Component

molecule2)

chemical structure of the component

no/no

Derivative

molecule2)

chemical structure of the derivative

no/no

Spectrum

   

Visual representation

--

graphical representation

no/no

Tabular representation

2D array1)

tabular representation

no/no

Associated data Measurement

   

Author

string

author of the measurement

no/yes

Date

date

date of measurement

yes/yes

Device

string

device used

no/yes

Method

string

explanation to the method

no/yes

Column

string

used chromatographic column

no/yes

Experimental conditions

string

further experimental conditions

no/yes

Systems Biology Data

   

Reactions

array of strings

associated reactions

no/yes

Enzymes

2D array1)

associated enzymes

no/yes

Genes

2D array1)

associated genes

no/yes

  1. 1) Table with a given number of columns and arbitrary number of rows.
  2. 2) Object storing a molecular structure.