BMC Bioinformatics

Table 2 Inferred true proportions of target genes of Ste12 in the Rich Medium and Mating Inducing conditions.

From: Effect of false positive and false negative rates on inference of binding target conservation across different conditions and species from ChIP-chip data

	FNR
	0.20	0.25	0.30	0.35	0.40
FPR = 0.001	0.974	0.973	0.972	0.971	0.969
	0.015	0.015	0.016	0.106	0.017
	0.002	0.002	0.001	0.001	0.001
	0.009	0.010	0.011	0.013	0.014
	0.20	0.25	0.30	0.35	0.40
FPR = 0.002	0.977	0.976	0.974	0.973	0.971
	0.014	0.014	0.014	0.015	0.015
	0.001	0.001	0.001	0	0
	0.009	0.010	0.011	0.012	0.013
	0.20	0.25	0.30	0.35	0.40
FPR = 0.003	0.979	0.978	0.976	0.975	0.973
	0.013	0.013	0.013	0.014	0.014
	0	0	0	0	0
	0.009	0.009	0.010	0.011	0.013
	0.20	0.25	0.30	0.35	0.40
FPR = 0.004	0.980	0.979	0.978	0.977	0.975
	0.011	0.012	0.012	0.012	0.013
	0	0	0	0	0
	0.008	0.009	0.010	0.011	0.012
	0.20	0.25	0.30	0.35	0.40
FPR = 0.005	0.982	0.981	0.980	0.979	0.977
	0.010	0.011	0.011	0.011	0.011
	0	0	0	0	0
	0.008	0.009	0.010	0.010	0.012

For different values of false positive and false negative rates, the four inferred proportions of the target genes of Ste12 in Rich Medium and Mating Inducing are tabulated. The observed vector of proportions is (0.976, 0.014, 0.004, 0.006)^t.

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ISSN: 1471-2105

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