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Table 6 Inferred true log odds ratios for target genes of Ste12 under the pseudohyphal condition in S. cerevisiae and S. mikatae.

From: Effect of false positive and false negative rates on inference of binding target conservation across different conditions and species from ChIP-chip data

 

FNR

  

0.20

0.25

0.30

0.35

0.40

FPR

0.001

5.48

5.88

6.43

7.22

8.37

 

0.002

5.88

6.26

6.93

7.92

9.35

 

0.003

6.56

6.79

7.60

8.87

10.65

 

0.004

8.16

8.00

8.90

10.51

12.69

 

0.005

11.07

11.36

12.67

14.75

17.36

  1. Inferred true log odds ratio values for different values of false positive rate and false negative rate for the binding targets of Ste12 under the pseudohyphal condition in S. cerevisiae and S. mikatae. The Observed log odds ratio is obtained from cross-tabulation of the binding targets in the two organisms, and is equal to 4.50.
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BMC Bioinformatics

ISSN: 1471-2105

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