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Table 2 Comparison of BSMAP and other mapping algorithms

From: BSMAP: whole genome bisulfite sequence MAPping program

 

Speed reads/sec/CPU core)

Uniquely Aligned Reads (%)

BSMAP

146

44.9%

Cokus Alignment [4]

~25 [4]

45.1%

Meissner mapping [2]

83*

39.1%

Lister mapping [3]

125*

42.5%

  1. * estimated speed based on SOAP, excluding the post processing time.