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Table 2 Comparison of BSMAP and other mapping algorithms

From: BSMAP: whole genome bisulfite sequence MAPping program

  Speed reads/sec/CPU core) Uniquely Aligned Reads (%)
BSMAP 146 44.9%
Cokus Alignment [4] ~25 [4] 45.1%
Meissner mapping [2] 83* 39.1%
Lister mapping [3] 125* 42.5%
  1. * estimated speed based on SOAP, excluding the post processing time.