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Figure 4 | BMC Bioinformatics

Figure 4

From: CLEAN: CLustering Enrichment ANalysis

Figure 4

Reproducibility of CLEAN and cwCLEAN scores. The reproducibility of the functional coherence results for 6 different clustering algorithms was assessed by calculating all pairwise Pearson's correlation coefficients between scores for all algorithms applied to four independent human breast cancer datasets (GEO expression series GSE1456 [29], GSE3494 [28], GSE7390 [31], and GSE11121 [30]). Rows and columns in this symmetric heatmap represent specific scores for a specific clustering in a specific dataset in the heatmap. The symmetric hierarchical clustering of rows and columns was constructed using pairwise Pearson's correlations between different scores as the similarity measures and applying the complete linkage principle.

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