Feature | Feature of | Data type | Kernel |
---|---|---|---|
COG (version 7) phylogenetic profiles [62] | Proteins | Binary vectors | Linear |
Sub-cellular localization [22] | Proteins | Binary vectors | Linear |
Cell cycle gene expression [24] | Proteins | Real vectors | Correlation (linear after standardization) |
Environment response gene expression [63] | Proteins | Real vectors | Correlation (linear after standardization) |
Protein pairs | Unweighted graph | Diffusion (β = 1) | |
Protein pairs | Weighted graph | Diffusion (β = 1) |