Table 4 Identification experiments using GO-UniProt data
From: Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology
| Seq. Similarity |
Pos/Neg (% Pos) | Methodolgy | AUC | TPR-0 | TPR-1% | TPR-5% |
|---|---|---|---|---|---|---|
| P-3 | 0.91 | 5.04 | 51.55 | 68.76 | ||
| PS-1–9 | 0.91 | 8.58 | 56.29 | 72.99 | ||
|
50% (Figure 2) |
4580/9043 (34%) | PF-1 | 0.85 | 0.33 | 29.06 | 48.84 |
| BLAST | 0.94 | 0.00 | 33.41 | 83.34 | ||
| PH-1 | 0.94 | 3.86 | 54.96 | 77.84 | ||
| PSH-1–9 | 0.94 | 7.40 | 55.07 | 80.41 | ||
| P-3 | 0.96 | 14.70 | 72.29 | 84.57 | ||
| PS-1–8 | 0.95 | 17.41 | 74.15 | 84.85 | ||
| 90% |
11267/14257 (44%) | PF-3 | 0.86 | 3.83 | 37.13 | 50.30 |
| BLAST | 0.97 | 0.00 | 47.56 | 92.36 | ||
| PH-3 | 0.97 | 20.13 | 67.81 | 84.49 | ||
| PSH-1–9 | 0.97 | 11.08 | 74.14 | 88.42 | ||
| P-3 | 0.98 | 23.40 | 82.09 | 91.12 | ||
| PS-3–9 | 0.97 | 24.23 | 81.38 | 89.63 | ||
| 0% |
17828/19348 (48%) | PF-3 | 0.87 | 3.48 | 46.42 | 56.46 |
| BLAST | 0.98 | 0.00 | 52.88 | 92.69 | ||
| PH-3 | 0.98 | 8.46 | 78.00 | 91.18 | ||
| PSH-1–9 | 0.98 | 4.31 | 80.45 | 92.06 |