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Table 4 Identification experiments using GO-UniProt data

From: Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology

Seq. Similarity Pos/Neg
(% Pos)
Methodolgy AUC TPR-0 TPR-1% TPR-5%
   P-3 0.91 5.04 51.55 68.76
   PS-1–9 0.91 8.58 56.29 72.99
50%
(Figure 2)
4580/9043
(34%)
PF-1 0.85 0.33 29.06 48.84
   BLAST 0.94 0.00 33.41 83.34
   PH-1 0.94 3.86 54.96 77.84
   PSH-1–9 0.94 7.40 55.07 80.41
   P-3 0.96 14.70 72.29 84.57
   PS-1–8 0.95 17.41 74.15 84.85
90% 11267/14257
(44%)
PF-3 0.86 3.83 37.13 50.30
   BLAST 0.97 0.00 47.56 92.36
   PH-3 0.97 20.13 67.81 84.49
   PSH-1–9 0.97 11.08 74.14 88.42
   P-3 0.98 23.40 82.09 91.12
   PS-3–9 0.97 24.23 81.38 89.63
0% 17828/19348
(48%)
PF-3 0.87 3.48 46.42 56.46
   BLAST 0.98 0.00 52.88 92.69
   PH-3 0.98 8.46 78.00 91.18
   PSH-1–9 0.98 4.31 80.45 92.06
  1. The results (including Figure 2) of DNA repair protein identification experiments using proteins drawn from UniProt containing the DNA repair Gene Ontology.