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Table 5 Classification: Double Strand Break Repair

From: Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology

Seq. Similarity

Pos/Neg

(% Pos)

Method

AUC

TPR-0

TPR-1%

TPR-5%

  

P

0.82

9.77

24.71

40.23

  

PS

0.89

25.86

54.02

66.67

50%

174/1656

(10%)

PF

0.80

9.77

17.82

35.63

  

BLAST

0.88

15.52

64.37

73.56

  

PH

0.83

5.75

17.82

47.70

  

PSH

0.89

1.72

25.29

64.94

  

P

0.92

16.92

55.64

71.05

  

PS

0.94

27.44

69.92

77.82

90%

266/4379

(6%)

PF

0.90

27.44

46.62

67.29

  

BLAST

0.92

13.53

76.69

83.08

  

PH

0.89

0.38

19.92

40.23

  

PSH

0.93

7.14

34.59

67.67

  

P

0.94

26.65

63.19

75.82

  

PS

0.94

34.62

73.90

83.24

0%

364/6983

(5%)

PF

0.91

26.65

58.24

69.51

  

BLAST

0.93

0.00

78.30

86.81

  

PH

0.87

2.47

10.71

29.12

  

PSH

0.93

2.75

29.12

60.71

  1. Experiments using Double Strand Break repair (GO:0006302) as the type of protein to identify. "Pos/Neg" shows the number of DSB repair-related and non-related proteins for a particular sequence similarity.