Figure 2
From: A fast and efficient gene-network reconstruction method from multiple over-expression experiments
Network reconstruction and comparison: in silico. Results of network reconstruction for the proposed algorithm (green lines) and NIR (blue lines) for in-silico experiments. Results for the fraction of correctly reconstructed links ((a)-(c)), and extended Matthews correlation coefficient ((d)-(f)) are shown. Three in-silico networks with different average degree were constructed, for ⟨
⟩ equals 1((a),(b)), 3((b),(e)) and 5((c),(f)). In the plots where the fraction of correctly reconstructed links are shown, circles denote the fraction of positive links F+ , squares the fraction of negative links F- and triangles no links F0. The red line represents the gambling threshold Frand.